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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
935
ChIP-seq
218
ATAC-seq
4
FAIRE-seq
2
DNase-seq
Assay category
935
DNA binding
224
DNA accessibility
Target of assay
543
histone modification
542
histone
387
transcription factor
279
narrow histone mark
263
broad histone mark
88
recombinant protein
85
RNA binding protein
28
chromatin remodeller
4
other context
4
other post-translational modification
Date released
255
November, 2017
161
October, 2019
93
May, 2019
78
August, 2021
66
August, 2017
65
April, 2019
64
November, 2018
63
February, 2023
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
32
November, 2019
30
December, 2018
27
May, 2020
22
February, 2021
21
January, 2019
12
October, 2017
7
July, 2019
3
March, 2020
1
May, 2021
Available data
2489
bam
2294
bigWig
1388
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1153
Homo sapiens
Biosample type
808
tissue
351
cell line
248
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
366
liver
165
brain
158
heart
137
pancreas
107
blood vessel
107
vasculature
93
kidney
70
artery
56
limb
54
blood
54
bodily fluid
27
epithelium
27
eye
25
nerve
19
musculature of body
13
spleen
11
adipose tissue
11
connective tissue
8
bone element
8
skeleton
1
pituitary gland
Project
1155
AMP
4
T1D
Genome assembly (visualization)
1020
GRCh38
964
hg19
Lab
1003
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
28
inconsistent control
24
inconsistent ontology term
1
inconsistent replicate
Audit category:
16
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
1159 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver
82
20
kidney
20
64
1
islet of Langerhans
20
37
1
1
left cardiac atrium
40
coronary artery
3
36
+ See 112 more…
cell line
HepG2
255
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
+ See 5 more…
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