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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1038
total RNA-seq
177
DNase-seq
109
single cell RNA-seq
58
ChIP-seq
25
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
ATAC-seq
2
RNA microarray
Assay category
1163
Transcription
179
DNA accessibility
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
530
February, 2021
163
June, 2019
144
May, 2020
116
August, 2021
116
July, 2018
89
August, 2017
58
November, 2017
47
July, 2019
42
May, 2021
37
March, 2020
25
February, 2020
20
November, 2019
17
October, 2019
9
November, 2018
6
April, 2018
5
January, 2019
4
February, 2023
2
December, 2019
Available data
2489
bam
2294
bigWig
1388
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1430
Homo sapiens
Biosample type
1252
tissue
319
primary cell
178
cell line
132
in vitro differentiated cells
4
stem cell
Organ
459
connective tissue
401
adipose tissue
316
pancreas
230
liver
190
heart
86
kidney
71
blood vessel
71
vasculature
60
artery
58
bone element
50
brain
43
limb
39
musculature of body
38
epithelium
18
ureter
8
embryo
8
eye
7
nerve
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1428
AMP
2
T1D
Genome assembly (visualization)
1242
GRCh38
1242
hg19
Lab
1420
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
43
inconsistent ontology term
7
audit script error
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
1430 results
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total RNA-seq
DNase-seq
single cell RNA-seq
ChIP-seq
pCHi-C
small RNA-seq
snDrop-seq
ATAC-seq
RNA microarray
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
147
2
1
1
bone tissue
58
heart left ventricle
3
3
18
1
+ See 87 more…
cell line
HepG2
14
58
1
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
RCC 7860 vector
1
1
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