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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
65
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
159
Transcription
129
DNA binding
74
DNA accessibility
9
DNA methylation
1
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
March, 2020
3
February, 2020
2
May, 2021
Available data
211
bigWig
196
bam
185
bed narrowPeak
158
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
1
bedpe bed3+
1
hic
Organism
372
Homo sapiens
Biosample type
306
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
759
liver
583
pancreas
546
connective tissue
487
adipose tissue
372
heart
316
kidney
263
brain
196
blood vessel
196
vasculature
158
bone element
139
artery
122
limb
89
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
8
embryo
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
spinal cord
1
thymus
Project
372
AMP
Genome assembly (visualization)
253
GRCh38
173
hg19
Lab
332
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
March, 2020
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
2
3
4
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
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