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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1344
ChIP-seq
1119
total RNA-seq
267
ATAC-seq
179
single cell RNA-seq
148
DNase-seq
87
RNA microarray
30
pCHi-C
27
WGBS
27
snATAC-seq
15
small RNA-seq
12
Hi-C
10
MeRIP-seq
7
RRBS
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1344
DNA binding
1315
Transcription
446
DNA accessibility
34
DNA methylation
12
3D chromatin structure
1
DNA sequencing
Target of assay
631
histone modification
630
histone
454
transcription factor
330
narrow histone mark
300
broad histone mark
264
control
92
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
other context
5
other post-translational modification
Date released
641
February, 2021
395
November, 2017
273
August, 2021
272
October, 2019
258
August, 2017
194
May, 2020
131
June, 2019
120
July, 2018
108
May, 2019
101
February, 2023
84
November, 2018
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
61
May, 2021
November, 2019
48
December, 2017
47
September, 2023
46
March, 2020
40
May, 2024
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
2
March, 2023
1
August, 2022
1
October, 2022
Available data
2386
bam
2201
bigWig
1300
bed narrowPeak
1168
tsv
873
bigBed narrowPeak
797
fastq
243
tagAlign
226
bed broadPeak
202
bigBed broadPeak
175
bed bed3+
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
3283
Homo sapiens
Biosample type
2652
tissue
1074
primary cell
644
cell line
389
in vitro differentiated cells
10
stem cell
Organ
760
liver
546
connective tissue
542
pancreas
487
adipose tissue
379
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
musculature of body
78
epithelium
61
blood
61
bodily fluid
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3188
AMP
47
KPMP
40
T1D
19
LungMap
2
community
Genome assembly (visualization)
2224
GRCh38
2165
hg19
Lab
2897
AMP-T2D consortium
142
Katalin Susztak, Upenn
57
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
165
inconsistent ontology term
28
inconsistent control
8
audit script error
1
inconsistent replicate
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
month_released!
November, 2019
organ_slims!
musculature of body
target.investigated_as!
other context
BIOSAMPLE
ASSAY
3296 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
MeRIP-seq
RRBS
STARR-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
...and 4 more
tissue
islet of Langerhans
71
273
49
6
1
4
7
2
4
1
1
adipose tissue
2
382
3
1
3
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
+ See 167 more…
cell line
HepG2
376
14
1
2
1
2
2
EndoC_BH1
2
32
18
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 14 more…
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