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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
total RNA-seq
84
RNA microarray
56
ChIP-seq
17
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
528
Transcription
56
DNA binding
17
DNA accessibility
Target of assay
36
transcription factor
15
control
5
histone
5
histone modification
3
broad histone mark
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
641
February, 2021
397
November, 2017
284
August, 2017
273
August, 2021
272
October, 2019
194
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
61
May, 2021
56
November, 2019
51
March, 2020
48
December, 2017
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
1
October, 2022
Available data
595
bam
563
bigWig
530
tsv
89
txt
58
bed narrowPeak
48
fastq
36
bigBed narrowPeak
8
tagAlign
6
csv
1
bed bed3
1
bed bed3+
Organism
689
Homo sapiens
Biosample type
593
tissue
96
cell line
69
in vitro differentiated cells
48
primary cell
3
stem cell
Organ
444
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
51
liver
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
Project
689
AMP
Genome assembly (visualization)
581
hg19
580
GRCh38
Lab
689
AMP-T2D consortium
Audit category:
110
inconsistent ontology term
27
inconsistent control
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
689 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
liver
38
1
right lobe of liver
10
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
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