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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
612
ChIP-seq
243
total RNA-seq
68
ATAC-seq
9
DNase-seq
7
WGBS
7
single cell RNA-seq
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
whole genome sequencing assay
Assay category
612
DNA binding
253
Transcription
77
DNA accessibility
8
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
343
transcription factor
142
histone modification
141
histone
124
control
82
recombinant protein
71
narrow histone mark
70
broad histone mark
59
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
69
February, 2021
54
August, 2017
53
November, 2018
50
May, 2019
48
December, 2017
40
May, 2022
37
August, 2021
35
February, 2023
32
October, 2019
15
July, 2019
6
March, 2020
5
January, 2019
4
February, 2020
3
June, 2019
1
December, 2018
Available data
807
bam
723
bigWig
533
bed narrowPeak
450
fastq
404
bigBed narrowPeak
235
tsv
88
tagAlign
66
bed broadPeak
66
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
961
Homo sapiens
Biosample type
494
tissue
467
cell line
50
primary cell
15
in vitro differentiated cells
Organ
762
liver
pancreas
547
connective tissue
488
adipose tissue
379
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
94
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
961
AMP
Genome assembly (visualization)
732
hg19
675
GRCh38
Lab
890
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
961 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
2
4
1
1
ascending aorta
16
2
1
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cell line
HepG2
378
14
1
1
2
2
2
1
smooth muscle cell of the coronary artery
6
52
8
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