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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
423
ChIP-seq
Assay category
423
DNA binding
Target of assay
666
histone modification
665
histone
455
transcription factor
343
narrow histone mark
322
broad histone mark
270
control
93
RNA binding protein
89
recombinant protein
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
226
November, 2017
57
November, 2018
29
December, 2017
26
December, 2018
23
August, 2017
15
October, 2018
11
August, 2021
8
January, 2019
7
October, 2019
6
April, 2019
5
February, 2021
5
May, 2024
4
May, 2019
1
November, 2019
Available data
417
bigWig
406
bam
395
bed narrowPeak
384
fastq
361
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
13
bed bed3+
5
tagAlign
3
tar
Organism
423
Homo sapiens
Biosample type
331
cell line
92
tissue
46
in vitro differentiated cells
9
primary cell
Organ
314
liver
41
blood
41
bodily fluid
18
pancreas
17
adipose tissue
17
connective tissue
16
heart
8
kidney
7
blood vessel
7
vasculature
6
spleen
5
artery
1
epithelium
Project
423
AMP
Genome assembly (visualization)
408
hg19
372
GRCh38
Lab
407
AMP-T2D consortium
11
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
Audit category:
25
inconsistent control
8
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
4
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
423 results
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Clear Filters
ChIP-seq
cell line
HepG2
277
GM12878
41
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
+ See 3 more…
tissue
liver
35
white adipose tissue
12
body of pancreas
9
islet of Langerhans
7
spleen
6
+ See 11 more…
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