Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
total RNA-seq
34
ChIP-seq
27
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
85
Transcription
34
DNA binding
28
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
13
control
10
broad histone mark
9
narrow histone mark
5
transcription factor
3
nucleotide modification
1
RNA binding protein
Date released
92
February, 2021
21
May, 2021
16
November, 2019
15
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
129
bam
112
bigWig
86
tsv
33
bed narrowPeak
7
bigBed narrowPeak
6
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
157
Homo sapiens
Biosample type
638
tissue
377
primary cell
158
cell line
3
in vitro differentiated cells
Organ
400
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
154
AMP
4
T1D
Genome assembly (visualization)
122
hg19
119
GRCh38
Lab
152
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
15
19
6
2
1
1
smooth muscle cell of the coronary artery
52
6
8
Panc1
13
1
1
Download