Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
19
ATAC-seq
19
ChIP-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
110
Transcription
19
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
21
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
82
February, 2021
30
August, 2021
20
May, 2021
15
October, 2019
10
March, 2020
6
February, 2023
6
November, 2020
4
November, 2019
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
582
bam
522
bigWig
fastq
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
174
Homo sapiens
Biosample type
1409
tissue
470
primary cell
214
in vitro differentiated cells
178
cell line
6
stem cell
Organ
71
pancreas
64
epithelium
54
artery
54
blood vessel
54
heart
54
vasculature
19
liver
11
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
169
AMP
7
T1D
2
community
Genome assembly (visualization)
106
hg19
100
GRCh38
Lab
145
AMP-T2D consortium
20
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
71
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
fastq
organ_slims!
bone element
eye
BIOSAMPLE
ASSAY
178 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
33
18
2
6
3
1
2
2
1
smooth muscle cell of the coronary artery
52
2
HepG2
9
4
2
2
1
1
H1-hESC
8
Panc1
7
1
+ See 14 more…
See all biosamples
Download