Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
90
ChIP-seq
18
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
107
Transcription
90
DNA binding
18
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
83
control
9
transcription factor
3
histone
3
histone modification
3
nucleotide modification
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
82
February, 2021
64
November, 2017
22
August, 2021
20
May, 2021
15
October, 2019
10
March, 2020
8
January, 2019
6
February, 2023
6
November, 2020
5
November, 2018
4
November, 2019
2
March, 2023
1
December, 2018
January, 2018
1
May, 2020
1
October, 2022
Available data
510
bam
450
bigWig
364
fastq
bed narrowPeak
294
bigBed narrowPeak
111
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
243
Homo sapiens
Biosample type
1789
tissue
793
primary cell
247
cell line
239
in vitro differentiated cells
7
stem cell
Organ
91
liver
71
pancreas
64
epithelium
54
artery
54
blood vessel
54
heart
54
vasculature
11
kidney
embryo
6
blood
6
bodily fluid
1
mammary gland
Project
238
AMP
7
T1D
2
community
Genome assembly (visualization)
121
hg19
98
GRCh38
Lab
214
AMP-T2D consortium
20
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
71
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed narrowPeak
month_released!
January, 2018
organ_slims!
embryo
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
247 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
14
69
2
2
2
1
1
EndoC_BH1
33
2
18
6
1
3
2
2
1
smooth muscle cell of the coronary artery
52
2
Panc1
7
1
GM12878
6
+ See 13 more…
See all biosamples
Download