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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
Assay category
109
DNA binding
Target of assay
109
transcription factor
30
RNA binding protein
23
recombinant protein
20
control
20
histone
20
histone modification
15
chromatin remodeller
10
broad histone mark
10
narrow histone mark
Date released
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
7
October, 2019
5
February, 2021
1
November, 2019
Available data
109
bam
108
bed narrowPeak
108
bigWig
96
fastq
95
bigBed narrowPeak
5
tagAlign
Organism
109
Homo sapiens
Biosample type
109
cell line
89
tissue
37
in vitro differentiated cells
7
primary cell
Organ
51
blood
51
bodily fluid
45
liver
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
109
AMP
Genome assembly (visualization)
108
GRCh38
106
hg19
Lab
109
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bigBed bedMethyl
month_released!
November, 2017
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
cell line
GM12878
51
HepG2
45
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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