Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
28
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
33
Transcription
28
DNA binding
19
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
14
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
63
bam
56
bigWig
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
bigBed broadPeak
1
hdf5
1
hic
Organism
90
Homo sapiens
Biosample type
499
tissue
345
primary cell
91
cell line
3
in vitro differentiated cells
Organ
343
liver
91
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
87
AMP
4
T1D
Genome assembly (visualization)
57
hg19
54
GRCh38
Lab
85
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
June, 2018
organ_slims!
lymph node
BIOSAMPLE
ASSAY
91 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
15
19
6
2
1
1
Panc1
13
1
Download