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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
317
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
253
transcription factor
82
recombinant protein
60
control
50
RNA binding protein
16
chromatin remodeller
4
histone
4
histone modification
narrow histone mark
1
broad histone mark
1
other context
1
other post-translational modification
Date released
256
November, 2017
46
November, 2018
29
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
360
fastq
359
bam
323
bigWig
300
bed narrowPeak
287
bigBed narrowPeak
52
bed broadPeak
bigBed broadPeak
15
tsv
7
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
340
Homo sapiens
Biosample type
340
cell line
314
tissue
10
in vitro differentiated cells
10
primary cell
Organ
340
liver
82
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
340
AMP
Genome assembly (visualization)
269
hg19
223
GRCh38
Lab
311
AMP-T2D consortium
29
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
317
14
2
2
2
1
1
1
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