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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
28
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
33
Transcription
28
DNA binding
20
DNA accessibility
2
3D chromatin structure
Target of assay
17
control
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
8
October, 2019
6
November, 2020
5
March, 2020
3
January, 2019
3
November, 2018
2
August, 2021
1
February, 2023
1
January, 2018
Available data
123
bam
111
bigWig
75
bed narrowPeak
bigBed narrowPeak
60
fastq
34
tsv
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
91
Homo sapiens
Biosample type
443
tissue
332
primary cell
92
cell line
3
in vitro differentiated cells
Organ
108
liver
85
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
18
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
88
AMP
4
T1D
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
86
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
92 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
15
19
6
2
1
1
Panc1
7
1
GM12878
6
1
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