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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
ATAC-seq
9
total RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Hi-C
2
HiChIP
2
pCHi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA binding
11
Transcription
9
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
59
control
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
20
August, 2021
13
February, 2021
5
February, 2023
March, 2020
4
November, 2018
3
January, 2019
3
October, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2022
Available data
517
bam
bigWig
427
fastq
383
bed narrowPeak
348
bigBed narrowPeak
79
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
97
Homo sapiens
Biosample type
848
tissue
320
primary cell
128
in vitro differentiated cells
100
cell line
3
stem cell
Organ
69
liver
pancreas
29
epithelium
10
artery
10
blood vessel
10
heart
10
vasculature
6
blood
6
bodily fluid
5
kidney
Project
93
AMP
5
T1D
2
community
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
73
AMP-T2D consortium
20
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
hdf5
month_released!
March, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
pCHi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
52
1
9
2
2
2
1
smooth muscle cell of the coronary artery
2
8
GM12878
6
EndoC_BH1
3
2
EndoC-BH1
1
1
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