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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
5
STARR-seq
4
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
whole genome sequencing assay
Assay category
9
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
20
August, 2021
5
February, 2023
March, 2023
Available data
14
bed narrowPeak
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
25
Homo sapiens
Biosample type
291
tissue
196
primary cell
44
in vitro differentiated cells
25
cell line
Organ
17
liver
epithelium
6
pancreas
2
kidney
Project
20
AMP
5
T1D
Genome assembly (visualization)
1
hg19
Lab
AMP-T2D consortium
20
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
March, 2023
organ_slims!
epithelium
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
STARR-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
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