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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 73ChIP-seq
  • 26ATAC-seq
  • 9total RNA-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3Hi-C
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 73DNA binding
  • 26DNA accessibility
  • 11Transcription
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 70control
  • 5transcription factor
  • 3nucleotide modification
  • 2RNA binding protein
  • 1broad histone mark
  • 1histone
  • 1histone modification
  • 1recombinant protein
Date released
  • 47November, 2017
  • 22August, 2021
  • 16May, 2021
  • 13February, 2021
  • 10October, 2019
  • 6February, 2023
  • 6November, 2020
  • 4March, 2020
  • 4November, 2018
  • 4November, 2019
  • 3January, 2019
  • 2March, 2023
  • 1December, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • 582bam
  • bigWig
  • 427fastq
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 136Homo sapiens
Biosample type
  • 1005tissue
  • 475primary cell
  • 140cell line
  • 135in vitro differentiated cells
  • 7stem cell
Organ
  • 69liver
  • 36pancreas
  • 29epithelium
  • 10artery
  • 10blood vessel
  • 10heart
  • 10vasculature
  • 7kidney
  • 6blood
  • 6bodily fluid
  • 1mammary gland
Project
  • 133AMP
  • 5T1D
  • 2community
Genome assembly (visualization)
  • 13hg19
  • 10GRCh38
Lab
  • 107AMP-T2D consortium
  • 20Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 34inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

140 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG252192221
EndoC_BH1217631221
smooth muscle cell of the coronary artery28
Panc17
GM128786
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