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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 484ChIP-seq
  • 113total RNA-seq
  • 29ATAC-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 5STARR-seq
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 484DNA binding
  • 115Transcription
  • 31DNA accessibility
  • 43D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 361transcription factor
  • 89recombinant protein
  • 83control
  • 65RNA binding protein
  • 38histone
  • 38histone modification
  • 30chromatin remodeller
  • 19broad histone mark
  • 19narrow histone mark
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 96February, 2021
  • 61November, 2018
  • 44August, 2021
  • 30October, 2019
  • 28December, 2018
  • 23January, 2019
  • 21May, 2021
  • 16November, 2019
  • 11March, 2020
  • 6February, 2023
  • 6November, 2020
  • 2March, 2023
  • 1January, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • 582bam
  • 522bigWig
  • 427fastq
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 658Homo sapiens
Biosample type
  • 2771tissue
  • 1086primary cell
  • 662cell line
  • 394in vitro differentiated cells
  • 10stem cell
Organ
  • 401liver
  • 92pancreas
  • 79epithelium
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 61blood
  • 61bodily fluid
  • 19kidney
  • 8embryo
  • 1mammary gland
Project
  • 651AMP
  • 9T1D
  • 2community
Genome assembly (visualization)
  • 530hg19
  • 464GRCh38
Lab
  • 615AMP-T2D consortium
  • 34Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 92inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
files.file_type!
  • csv
BIOSAMPLE
ASSAY

662 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG237814122211
EndoC_BH1153319613221
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
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