Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
448
ChIP-seq
99
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
WGBS
Assay category
448
DNA binding
99
Transcription
31
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
336
transcription factor
89
recombinant protein
76
control
58
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
29
October, 2019
28
December, 2018
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
10
August, 2021
6
November, 2020
5
February, 2023
1
January, 2018
1
May, 2020
Available data
559
bam
488
bigWig
404
fastq
375
bed narrowPeak
340
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
hdf5
1
hic
Organism
600
Homo sapiens
Biosample type
2757
tissue
1084
primary cell
600
cell line
394
in vitro differentiated cells
8
stem cell
Organ
365
liver
90
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
43
blood
43
bodily fluid
17
kidney
8
embryo
1
mammary gland
Project
591
AMP
9
T1D
Genome assembly (visualization)
494
hg19
443
GRCh38
Lab
589
AMP-T2D consortium
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
lab.title!
Bing Ren, UCSD
month_released!
January, 2019
BIOSAMPLE
ASSAY
600 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
Hi-C
HiChIP
WGBS
cell line
HepG2
360
1
2
1
1
EndoC_BH1
15
33
19
6
3
2
1
2
smooth muscle cell of the coronary artery
6
52
8
GM12878
42
1
Panc1
13
1
+ See 10 more…
See all biosamples
Download