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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
366
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
366
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
59
control
54
RNA binding protein
20
chromatin remodeller
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
389
Homo sapiens
Biosample type
389
cell line
291
tissue
15
in vitro differentiated cells
8
primary cell
Organ
389
liver
92
pancreas
79
epithelium
61
blood
61
bodily fluid
60
artery
60
blood vessel
60
heart
60
vasculature
19
kidney
8
embryo
1
mammary gland
Project
389
AMP
Genome assembly (visualization)
318
hg19
259
GRCh38
Lab
358
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
month_released!
June, 2019
BIOSAMPLE
ASSAY
389 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
366
14
2
2
2
1
1
1
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