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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
Assay category
129
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
83
November, 2017
16
November, 2018
14
October, 2019
10
November, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
127
bigWig
126
bam
125
bed narrowPeak
103
bigBed narrowPeak
100
fastq
15
bed broadPeak
15
bigBed broadPeak
11
tagAlign
Organism
129
Homo sapiens
Biosample type
631
tissue
237
primary cell
129
cell line
112
in vitro differentiated cells
2
stem cell
Organ
102
liver
19
pancreas
12
epithelium
7
kidney
1
blood
1
bodily fluid
Project
127
AMP
2
T1D
Genome assembly (visualization)
124
hg19
122
GRCh38
Lab
126
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
19
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
vcf
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
cell line
HepG2
102
EndoC_BH1
12
Panc1
7
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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