Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
463
ChIP-seq
34
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
3
Hi-C
2
Capture-C
2
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
463
DNA binding
36
Transcription
21
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
355
transcription factor
89
recombinant protein
78
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
November, 2019
11
March, 2020
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
472
bam
427
bigWig
427
fastq
378
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
40
tsv
12
tagAlign
3
tar
2
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
541
Homo sapiens
Biosample type
2033
tissue
952
primary cell
544
cell line
347
in vitro differentiated cells
10
stem cell
Organ
399
liver
61
blood
61
bodily fluid
49
pancreas
36
epithelium
19
kidney
8
embryo
1
mammary gland
Project
538
AMP
4
T1D
2
community
Genome assembly (visualization)
423
hg19
359
GRCh38
Lab
502
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
50
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
xls
month_released!
February, 2021
February, 2023
November, 2019
BIOSAMPLE
ASSAY
544 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
STARR-seq
pCHi-C
Hi-C
Capture-C
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
1
2
1
1
GM12878
60
1
EndoC_BH1
2
6
18
6
2
Panc1
13
1
1
H1-hESC
8
+ See 12 more…
See all biosamples
Download