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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
385
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
293
transcription factor
89
recombinant protein
66
control
54
RNA binding protein
23
histone
23
histone modification
20
chromatin remodeller
12
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
302
November, 2017
87
February, 2021
46
November, 2018
29
October, 2019
15
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
Available data
522
bam
467
bigWig
367
fastq
350
bed narrowPeak
301
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
502
Homo sapiens
Biosample type
1739
tissue
509
primary cell
502
cell line
265
in vitro differentiated cells
3
stem cell
Organ
354
liver
63
pancreas
60
artery
blood
60
blood vessel
60
bodily fluid
60
heart
60
vasculature
51
epithelium
15
kidney
8
embryo
Project
498
AMP
4
T1D
Genome assembly (visualization)
438
hg19
395
GRCh38
Lab
502
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
lab.title!
Karen Mohlke, UNC
organ_slims!
blood
BIOSAMPLE
ASSAY
502 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
347
5
1
1
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
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