Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
445
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
445
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
344
transcription factor
89
recombinant protein
72
control
64
RNA binding protein
30
chromatin remodeller
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
2
other context
2
other post-translational modification
Date released
302
November, 2017
87
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
562
Homo sapiens
Biosample type
1576
tissue
562
cell line
454
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
354
liver
63
pancreas
60
artery
60
blood
60
blood vessel
60
bodily fluid
60
heart
60
vasculature
51
epithelium
15
kidney
8
embryo
Project
558
AMP
4
T1D
Genome assembly (visualization)
492
hg19
449
GRCh38
Lab
562
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
month_released!
June, 2019
BIOSAMPLE
ASSAY
562 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
347
5
1
1
GM12878
60
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
15
33
1
Panc1
13
1
+ See 6 more…
See all biosamples
Download