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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
465
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
582
Homo sapiens
Biosample type
1907
tissue
609
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
578
AMP
4
T1D
Genome assembly (visualization)
509
hg19
463
GRCh38
Lab
582
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hic
BIOSAMPLE
ASSAY
582 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
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