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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
459
DNA binding
52
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
345
transcription factor
89
recombinant protein
74
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
61
November, 2018
30
October, 2019
29
February, 2021
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
516
bam
466
bigWig
427
fastq
392
bed narrowPeak
355
bigBed narrowPeak
67
tsv
59
bed broadPeak
59
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
517
Homo sapiens
Biosample type
1874
tissue
611
primary cell
517
cell line
293
in vitro differentiated cells
3
stem cell
Organ
366
liver
artery
66
blood vessel
66
heart
66
vasculature
64
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
513
AMP
4
T1D
Genome assembly (visualization)
446
hg19
400
GRCh38
Lab
517
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
artery
BIOSAMPLE
ASSAY
517 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
359
5
1
1
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
1
H1-hESC
8
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