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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
28
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
33
Transcription
28
DNA binding
2
DNA accessibility
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
8
control
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
15
November, 2019
15
October, 2019
5
May, 2021
3
March, 2020
Available data
63
bam
56
bigWig
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
64
Homo sapiens
Biosample type
425
tissue
194
primary cell
64
cell line
3
in vitro differentiated cells
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
64
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
60
AMP
4
T1D
Genome assembly (visualization)
55
GRCh38
55
hg19
Lab
64
AMP-T2D consortium
Audit category:
49
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
July, 2019
BIOSAMPLE
ASSAY
64 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
EndoC_BH1
33
15
1
Panc1
13
1
1
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