Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
441
ChIP-seq
39
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
441
DNA binding
39
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
331
transcription factor
89
recombinant protein
71
control
58
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
61
November, 2018
29
February, 2021
29
October, 2019
27
December, 2018
January, 2019
15
November, 2019
August, 2021
5
March, 2020
5
May, 2021
Available data
485
bam
424
bigWig
404
fastq
363
bed narrowPeak
340
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
45
tsv
14
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
485
Homo sapiens
Biosample type
1813
tissue
578
primary cell
485
cell line
254
in vitro differentiated cells
3
stem cell
Organ
361
liver
66
artery
blood vessel
66
heart
66
vasculature
63
pancreas
51
epithelium
42
blood
42
bodily fluid
15
kidney
Project
481
AMP
4
T1D
Genome assembly (visualization)
417
hg19
371
GRCh38
Lab
485
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
January, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
485 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
1
1
EndoC_BH1
15
33
1
GM12878
42
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
+ See 5 more…
See all biosamples
Download