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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
349
ChIP-seq
Assay category
349
DNA binding
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
240
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
7
October, 2019
5
February, 2021
1
November, 2019
Available data
356
bigWig
352
bed narrowPeak
349
bam
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
349
Homo sapiens
Biosample type
349
cell line
89
tissue
37
in vitro differentiated cells
6
primary cell
Organ
285
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
349
AMP
Genome assembly (visualization)
341
hg19
309
GRCh38
Lab
349
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
cell line
HepG2
285
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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