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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
ChIP-seq
100
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
464
DNA binding
100
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
34
histone
34
histone modification
30
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
March, 2020
5
May, 2021
Available data
577
bam
515
bigWig
427
fastq
403
bed narrowPeak
355
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
577
Homo sapiens
Biosample type
1672
tissue
591
primary cell
577
cell line
289
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
60
pancreas
48
epithelium
15
kidney
8
embryo
Project
576
AMP
1
T1D
Genome assembly (visualization)
504
hg19
458
GRCh38
Lab
577
AMP-T2D consortium
Audit category:
59
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
March, 2020
organ_slims!
brain
pericardium
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
14
31
1
Panc1
13
1
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