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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
370
DNA binding
52
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
345
transcription factor
recombinant protein
74
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
248
November, 2017
45
November, 2018
29
February, 2021
27
December, 2018
23
January, 2019
22
October, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
427
bam
378
bigWig
345
fastq
304
bed narrowPeak
274
bigBed narrowPeak
67
tsv
59
bed broadPeak
59
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
427
Homo sapiens
Biosample type
1760
tissue
597
primary cell
427
cell line
290
in vitro differentiated cells
3
stem cell
Organ
284
liver
66
artery
66
blood vessel
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
8
embryo
8
kidney
Project
423
AMP
4
T1D
Genome assembly (visualization)
360
hg19
311
GRCh38
Lab
427
AMP-T2D consortium
Audit category:
55
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2017
organ_slims!
heart
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
427 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
277
5
1
1
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
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