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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 465ChIP-seq
  • 104total RNA-seq
  • 10ATAC-seq
  • 2DNase-seq
  • 1WGBS
Assay category
  • 465DNA binding
  • 104Transcription
  • 12DNA accessibility
  • 1DNA methylation
Target of assay
  • 349transcription factor
  • 89recombinant protein
  • 76control
  • 64RNA binding protein
  • 35histone
  • 35histone modification
  • 30chromatin remodeller
  • 18broad histone mark
  • 17narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 314November, 2017
  • 95February, 2021
  • 61November, 2018
  • 29October, 2019
  • 27December, 2018
  • 23January, 2019
  • 15November, 2019
  • 8August, 2021
  • 5March, 2020
  • 5May, 2021
Available data
  • 582bam
  • 522bigWig
  • 427fastq
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 582Homo sapiens
Biosample type
  • 1907tissue
  • 609primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 366liver
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 63pancreas
  • 60blood
  • 60bodily fluid
  • 51epithelium
  • 15kidney
  • 8embryo
Project
  • 578AMP
  • 4T1D
Genome assembly (visualization)
  • 509hg19
  • 463GRCh38
Lab
  • 582AMP-T2D consortium
Audit category:
  • 62inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

582 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
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