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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
3
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
3
November, 2017
2
October, 2019
1
August, 2021
1
February, 2021
1
November, 2019
Available data
580
bam
520
bigWig
425
fastq
402
bed narrowPeak
353
bigBed narrowPeak
119
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
8
Homo sapiens
Biosample type
215
tissue
42
primary cell
32
in vitro differentiated cells
8
cell line
3
stem cell
Organ
5
liver
3
pancreas
1
epithelium
Project
8
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
other context
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
3
1
1
Panc1
1
1
EndoC_BH1
1
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