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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
54
ChIP-seq
5
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
113
Transcription
54
DNA binding
2
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
78
February, 2021
54
November, 2017
17
August, 2021
9
March, 2020
5
January, 2019
5
October, 2019
4
May, 2021
1
May, 2020
1
November, 2019
Available data
552
bam
492
bigWig
397
fastq
374
bed narrowPeak
325
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
174
Homo sapiens
Biosample type
1289
tissue
318
primary cell
174
cell line
132
in vitro differentiated cells
4
stem cell
Organ
69
liver
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
35
pancreas
8
embryo
6
kidney
1
mammary gland
Project
172
AMP
2
T1D
Genome assembly (visualization)
160
hg19
145
GRCh38
Lab
165
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
12
inconsistent control read length
files.file_type!
ibed
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
cell line
HepG2
14
54
1
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
RCC 7860 vector
1
1
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