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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
300
ChIP-seq
10
ATAC-seq
Assay category
300
DNA binding
10
DNA accessibility
Target of assay
280
transcription factor
81
recombinant protein
57
RNA binding protein
24
chromatin remodeller
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
1
other context
1
other post-translational modification
Date released
197
November, 2017
56
November, 2018
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
October, 2019
12
November, 2019
1
March, 2020
1
May, 2021
Available data
526
bam
475
bigWig
399
fastq
362
bed narrowPeak
320
bigBed narrowPeak
115
tsv
58
bed broadPeak
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
310
Homo sapiens
Biosample type
658
tissue
310
cell line
229
primary cell
129
in vitro differentiated cells
2
stem cell
Organ
256
liver
27
blood
27
bodily fluid
14
epithelium
14
pancreas
12
artery
12
blood vessel
12
heart
12
vasculature
Project
308
AMP
2
T1D
Genome assembly (visualization)
306
hg19
272
GRCh38
Lab
296
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
December, 2018
October, 2019
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
255
1
GM12878
27
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
iPSC derived cell line
1
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