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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
45
DNA binding
12
DNA accessibility
Target of assay
24
transcription factor
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
7
recombinant protein
2
RNA binding protein
Date released
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
582
bam
522
bigWig
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
57
Homo sapiens
Biosample type
811
tissue
189
primary cell
57
cell line
37
in vitro differentiated cells
Organ
21
pancreas
15
epithelium
15
liver
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
55
AMP
2
T1D
Genome assembly (visualization)
57
hg19
43
GRCh38
Lab
43
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent replicate
files.file_type!
fastq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
14
1
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
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