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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
MPRA
Assay category
348
DNA binding
12
DNA accessibility
Target of assay
327
transcription factor
88
recombinant protein
61
RNA binding protein
35
histone
35
histone modification
28
chromatin remodeller
18
narrow histone mark
broad histone mark
2
other context
2
other post-translational modification
Date released
242
November, 2017
56
November, 2018
December, 2018
15
January, 2019
14
February, 2021
13
August, 2021
12
October, 2019
6
November, 2019
1
March, 2020
1
May, 2021
1
October, 2022
Available data
537
bam
477
bigWig
391
fastq
360
bed narrowPeak
318
bigBed narrowPeak
119
tsv
51
bed broadPeak
51
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
360
Homo sapiens
Biosample type
885
tissue
361
cell line
183
primary cell
96
in vitro differentiated cells
1
stem cell
Organ
300
liver
27
blood
27
bodily fluid
12
artery
12
blood vessel
12
heart
12
pancreas
12
vasculature
9
epithelium
8
kidney
Project
359
AMP
2
T1D
Genome assembly (visualization)
356
hg19
315
GRCh38
Lab
348
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
361 results
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ChIP-seq
ATAC-seq
DNase-seq
MPRA
cell line
HepG2
299
1
GM12878
27
smooth muscle cell of the coronary artery
4
8
EndoC_BH1
7
1
Panc1
3
1
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