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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
whole genome sequencing assay
Assay category
338
DNA binding
12
DNA accessibility
1
DNA sequencing
Target of assay
301
transcription factor
88
recombinant protein
53
RNA binding protein
34
histone
34
histone modification
20
chromatin remodeller
17
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
15
August, 2021
15
October, 2019
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
522
bam
467
bigWig
367
fastq
350
bed narrowPeak
301
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
351
Homo sapiens
Biosample type
971
tissue
351
cell line
278
primary cell
87
in vitro differentiated cells
2
stem cell
Organ
309
liver
54
blood
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
349
AMP
2
T1D
Genome assembly (visualization)
346
hg19
304
GRCh38
Lab
336
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bodily fluid
connective tissue
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
ATAC-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
307
1
1
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
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