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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
81
DNA binding
3
DNA accessibility
Target of assay
60
transcription factor
19
histone
19
histone modification
11
RNA binding protein
10
chromatin remodeller
10
narrow histone mark
9
broad histone mark
7
recombinant protein
Date released
27
December, 2018
15
January, 2019
15
October, 2019
12
November, 2018
12
November, 2019
1
February, 2021
1
March, 2020
1
May, 2021
Available data
142
bam
126
bigWig
84
bed narrowPeak
62
bigBed narrowPeak
60
fastq
44
tsv
2
bed bed3+
2
tagAlign
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
84
Homo sapiens
Biosample type
707
tissue
272
primary cell
93
in vitro differentiated cells
84
cell line
2
stem cell
Organ
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
blood vessel
12
heart
12
vasculature
8
kidney
Project
82
AMP
2
T1D
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
84
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent control
month_released!
August, 2021
organ_slims!
blood vessel
liver
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
GM12878
54
EndoC_BH1
13
1
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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