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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
350
DNA binding
12
DNA accessibility
Target of assay
313
transcription factor
88
recombinant protein
55
RNA binding protein
34
histone
34
histone modification
22
chromatin remodeller
17
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
December, 2018
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
524
bam
467
bigWig
376
fastq
362
bed narrowPeak
313
bigBed narrowPeak
106
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
362
Homo sapiens
Biosample type
975
tissue
362
cell line
295
primary cell
118
in vitro differentiated cells
2
stem cell
Organ
308
liver
21
pancreas
15
epithelium
12
artery
12
blood
12
blood vessel
12
bodily fluid
12
heart
12
vasculature
8
kidney
Project
360
AMP
2
T1D
Genome assembly (visualization)
358
hg19
316
GRCh38
Lab
348
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
January, 2019
organ_slims!
embryo
BIOSAMPLE
ASSAY
362 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
EndoC_BH1
13
1
GM12878
12
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
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