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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
10
ATAC-seq
Assay category
377
DNA binding
10
DNA accessibility
Target of assay
345
transcription factor
81
recombinant protein
63
RNA binding protein
30
chromatin remodeller
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
2
other context
other post-translational modification
Date released
247
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
551
bam
500
bigWig
425
fastq
387
bed narrowPeak
345
bigBed narrowPeak
115
tsv
57
bed broadPeak
57
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
387
Homo sapiens
Biosample type
830
tissue
387
cell line
274
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
306
liver
54
blood
54
bodily fluid
14
epithelium
14
pancreas
12
artery
12
blood vessel
12
heart
12
vasculature
Project
385
AMP
2
T1D
Genome assembly (visualization)
383
hg19
341
GRCh38
Lab
373
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
organ_slims!
large intestine
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
ATAC-seq
cell line
HepG2
305
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
iPSC derived cell line
1
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