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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 392ChIP-seq
  • 10ATAC-seq
  • 2DNase-seq
Assay category
  • 392DNA binding
  • 12DNA accessibility
Target of assay
  • 352transcription factor
  • 88recombinant protein
  • 63RNA binding protein
  • 35histone
  • 35histone modification
  • 30chromatin remodeller
  • 18narrow histone mark
  • 17broad histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 249November, 2017
  • 56November, 2018
  • 27December, 2018
  • 15January, 2019
  • 15October, 2019
  • 14August, 2021
  • 14February, 2021
  • 12November, 2019
  • 1March, 2020
  • 1May, 2021
Available data
  • 582bam
  • 522bigWig
  • 427fastq
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 404Homo sapiens
Biosample type
  • 984tissue
  • 404cell line
  • 295primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 308liver
  • 54blood
  • 54bodily fluid
  • 21pancreas
  • 15epithelium
  • 12artery
  • 12blood vessel
  • 12heart
  • 12vasculature
  • 8kidney
Project
  • 402AMP
  • 2T1D
Genome assembly (visualization)
  • 400hg19
  • 358GRCh38
Lab
  • 390AMP-T2D consortium
  • 14Bing Ren, UCSD
Audit category:
  • 21inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

404 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
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