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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
20
ChIP-seq
5
pCHi-C
2
Hi-C
1
ATAC-seq
Assay category
113
Transcription
20
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
5
transcription factor
4
control
Date released
86
February, 2021
18
August, 2021
12
November, 2017
9
March, 2020
5
January, 2019
4
May, 2021
4
October, 2019
2
November, 2019
1
May, 2020
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
141
Homo sapiens
Biosample type
1208
tissue
326
primary cell
178
in vitro differentiated cells
141
cell line
4
stem cell
Organ
58
artery
58
blood vessel
58
heart
58
vasculature
36
epithelium
35
pancreas
28
liver
8
embryo
6
kidney
1
mammary gland
Project
139
AMP
2
T1D
Genome assembly (visualization)
124
hg19
118
GRCh38
Lab
131
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
40
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
July, 2018
BIOSAMPLE
ASSAY
141 results
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total RNA-seq
ChIP-seq
pCHi-C
Hi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
33
1
1
HepG2
14
12
1
1
H1-hESC
8
RCC 7860 vector
1
1
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