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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
5
pCHi-C
1
Hi-C
Assay category
79
Transcription
1
3D chromatin structure
Date released
52
February, 2021
18
August, 2021
6
March, 2020
5
January, 2019
3
October, 2019
1
May, 2020
Available data
531
bam
472
bigWig
427
fastq
389
bed narrowPeak
354
bigBed narrowPeak
84
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
85
Homo sapiens
Biosample type
967
tissue
139
primary cell
136
in vitro differentiated cells
85
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
epithelium
35
pancreas
16
liver
8
embryo
6
kidney
1
mammary gland
Project
85
AMP
Genome assembly (visualization)
71
hg19
70
GRCh38
Lab
75
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
month_released!
July, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
pCHi-C
Hi-C
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
1
1
H1-hESC
8
RCC 7860 vector
1
1
early embryonic cell
2
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