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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
45
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
99
Transcription
45
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
24
transcription factor
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
7
recombinant protein
2
RNA binding protein
Date released
83
February, 2021
22
August, 2021
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
582
bam
522
bigWig
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
150
Homo sapiens
Biosample type
1408
tissue
387
primary cell
150
cell line
142
in vitro differentiated cells
Organ
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
50
epithelium
14
liver
12
kidney
8
embryo
1
blood
1
bodily fluid
Project
146
AMP
4
T1D
Genome assembly (visualization)
150
hg19
133
GRCh38
Lab
136
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
fastq
organ_slims!
limb
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
4
EndoC_BH1
33
13
2
HepG2
14
H1-hESC
8
Panc1
6
1
1
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