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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
2
DNase-seq
Assay category
257
DNA binding
2
DNA accessibility
Target of assay
272
transcription factor
66
recombinant protein
RNA binding protein
23
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
November, 2018
25
December, 2018
9
January, 2019
8
October, 2019
Available data
478
bam
423
bigWig
324
fastq
306
bed narrowPeak
259
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
hdf5
1
txt
1
vcf
0
cool
Organism
259
Homo sapiens
Biosample type
524
tissue
259
cell line
102
primary cell
15
in vitro differentiated cells
Organ
217
liver
34
blood
34
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
259
AMP
Genome assembly (visualization)
258
hg19
231
GRCh38
Lab
259
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
8
missing controlled_by
Audit category:
14
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
259 results
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ChIP-seq
DNase-seq
cell line
HepG2
217
GM12878
34
Panc1
6
1
glomerular visceral epithelial cell
1
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