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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
2
DNase-seq
Assay category
104
DNA binding
2
DNA accessibility
Target of assay
95
transcription factor
29
RNA binding protein
15
chromatin remodeller
15
recombinant protein
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
Date released
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
8
October, 2019
Available data
268
bam
254
bigWig
155
bed narrowPeak
119
tsv
112
fastq
106
bigBed narrowPeak
8
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
106
Homo sapiens
Biosample type
494
tissue
106
cell line
88
primary cell
14
in vitro differentiated cells
Organ
54
blood
54
bodily fluid
44
liver
7
pancreas
1
epithelium
1
kidney
Project
106
AMP
Genome assembly (visualization)
106
GRCh38
104
hg19
Lab
106
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
July, 2018
November, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
DNase-seq
cell line
GM12878
54
HepG2
44
Panc1
6
1
glomerular visceral epithelial cell
1
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