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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
351
ChIP-seq
2
DNase-seq
Assay category
351
DNA binding
2
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
other post-translational modification
Date released
247
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
8
October, 2019
Available data
575
bam
515
bigWig
425
fastq
401
bed narrowPeak
353
bigBed narrowPeak
115
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
353
Homo sapiens
Biosample type
558
tissue
353
cell line
108
primary cell
17
in vitro differentiated cells
Organ
291
liver
54
blood
54
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
353
AMP
Genome assembly (visualization)
349
hg19
321
GRCh38
Lab
353
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2021
November, 2020
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
353 results
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ChIP-seq
DNase-seq
cell line
HepG2
291
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
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