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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 353ChIP-seq
  • 2DNase-seq
Assay category
  • 353DNA binding
  • 2DNA accessibility
Target of assay
  • 328transcription factor
  • 81recombinant protein
  • 61RNA binding protein
  • 30chromatin remodeller
  • 20histone
  • 20histone modification
  • 10broad histone mark
  • 10narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 249November, 2017
  • 56November, 2018
  • 27December, 2018
  • 15January, 2019
  • 8October, 2019
Available data
  • 582bam
  • 522bigWig
  • 427fastq
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 355Homo sapiens
Biosample type
  • 561tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 293liver
  • 54blood
  • 54bodily fluid
  • 7pancreas
  • 1epithelium
  • 1kidney
Project
  • 355AMP
Genome assembly (visualization)
  • 351hg19
  • 323GRCh38
Lab
  • 355AMP-T2D consortium
Audit category:
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

355 results

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ChIP-seq
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cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
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