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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
100
total RNA-seq
3
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
404
DNA binding
100
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
349
transcription factor
81
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
12
November, 2019
8
October, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
567
bam
510
bigWig
427
fastq
396
bed narrowPeak
354
bigBed narrowPeak
113
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
txt
1
vcf
Organism
510
Homo sapiens
Biosample type
1681
tissue
585
primary cell
510
cell line
256
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
kidney
8
embryo
Project
506
AMP
4
T1D
Genome assembly (visualization)
505
hg19
442
GRCh38
Lab
496
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
48
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
txt
organ_slims!
kidney
BIOSAMPLE
ASSAY
510 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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